Review

integrative genomics viewer igv v2.18.4 (Broad Institute Inc)

About

News

Press Release

Team

Advisors

Partners

Contact

Bioz Stars

Bioz vStars

Buy from Supplier

Structured Review

Broad Institute Inc integrative genomics viewer igv v2.18.4
Integrative Genomics Viewer Igv V2.18.4, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/integrative+genome+viewer+igv/integrative+genomics+viewer/pm40643528-45-18-23
Average 90 stars, based on 1 article reviews

integrative genomics viewer igv v2.18.4 - by Bioz Stars, 2026-09

90/100 stars

Images

other:

Article Title: Developmental transcriptional control of mitochondrial homeostasis is required for activity-dependent synaptic connectivity
Article Snippet: Drosophila reads were aligned with the dm6 reference Drosophila genome, human – with hg38 reference genome using Integrative Genome Viewer IGV and Genomatix software.

Article Title: Copy number variants from 4800 exomes contribute to ~7% of genetic diagnoses in movement disorders, muscle disorders and neuropathies.
Article Snippet: Nevertheless, one or two exon CNVs are present in the raw data and visualized in Integrative Genome Viewer (IGV, Broad Institute, Massachusetts, USA) [14].

Sequencing:

Article Title: A New High Penetrant Intronic Pathogenic Variant Related to Long QT Syndrome Type 2.
Article Snippet: Variant annotation, including population, functional, disease-related, and in silico predictive algorithms, was conducted using Ion Reporter (Thermo Fisher Scientific) and HD Genome One (DREAMgenics SL, Oviedo, Spain). .. The Integrative Genome Viewer (IGV, Broad Institute, Cambridge, MA, USA) was used for in-depth coverage analysis, sequence quality assessment, and variant identification. .. Familial variant screening was conducted via Sanger sequencing using an ABI3130XL sequencer (Thermo Fisher Scientific).

Article Title: Familial Adenomatous Polyposis with Atypical Clinical Morphology and Genetic Variants.
Article Snippet: Sequencing was performed using a NextSeq500 (Illumina, San Diego, CA, USA), and the data were analyzed and annotated using GATK Best Practice and GermlineCNVCaller (Broad Institute, Cambridge, MA, USA). .. The Integrative Genome Viewer (IGV; Broad Institute) was used to visualize the alignment of the sequence reads to the reference sequence. .. Furthermore, multiplex ligation-dependent probe amplification (MLPA) analyses were performed for the APC (P043-E 1) and MUTYH (P378-D1) genes according to the manufacturer’s protocol (MRC-Holland, Amsterdam, The Netherlands).

Variant Assay:

Article Title: Neoantigen Targetability in Progressive Advanced Melanoma
Article Snippet: .. The selected variant calls were then visually inspected using Integrative Genome Viewer (IGV, Broad Institute) to exclude false positives (25–27). ..